! ! assign exval = 0.0 end ! 20.363 43.851 12.047 assign dim = 110 end assign xcent =20.363 end assign ycent =43.851 end assign zcent =12.047 end ! read ! read mol 1 ! # 1 file "1brsA.pdb" ! from a file fpdb ! in PDB format end set ! read charge ! set the charges radius ! and the radii of all of the atoms param opls ! using the parameter set "opls" file "uhbd.qtable" ! from the file end print apar mol1 end ! check after elec ! calculate the electrostatic potential mol1 gcenter $xcent $ycent $zcent ! specified center - optional dime $dim $dim $dim ! specified dimensions ionstr 150.0 ! salt concentration data rion 2.0 ! stern layer - important if full pb bcfl 2 ! asymptotical boundaries - usually better than bcfl 1 spacing 1.00 ! grid spacing maxi 1000 ! this is too much - actually it takes 60-100 sdie 78 ! in water dielectric end write phi file "1brsA.grd" binary end ! binary is smaller than asci - now some 5 M stop