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Publications

Ann Zahle Larsen, Lars Folke Olsen, Ursula Kummer (2004): On the Encoding and Decoding of Calcium Signals in Hepatocytes, Biophys. Chem., 107 , 83-99

Katja Wegner, Stephan Jansen, Stefan Wuchty, Ursula Kummer (2004): CombAlign: A Protein Sequence Alignment Algorithm Considering Recombinations, In Silico Biol., 4 , 21

Ursula Rost, Ursula Kummer (2004): Visualisation of Biochemical Network Simulations with SimWiz, IEE Systems Biol., 1 , 184-189

Lars Folke Olsen, Ursula Kummer, Andreii Kindzelskii, Howard Petty (2003): A Model of the Oscillatory Metabolism of Activated Neutrophils, Biophys. J., 84 , 69-81

Lars Folke Olsen, Anita Lunding, Ursula Kummer (2003): On the Mechanism of Melatonin-induced Oscillations in the Peroxidase-Oxidase Reaction, Arch. Biochem. Biophys., 410 , 287-295

Lars Folke Olsen, Marcus J.B. Hauser, Ursula Kummer (2003): Mechanism of Protection of Peroxidase Activity by Oscillatory Dynamics, Eur. J. Biochem., 270 , 2796-2804

Razif G. Gabdoulline, Ursula Kummer, Lars Folke Olsen, Rebecca C. Wade (2003): From Molecular Structure to Chemical Oscillations by Combining Simulation Techniques, Biophys. J., 85 , 1421-1428

Ann Zahle Larsen, Ursula Kummer (2003): Information Processing in Calcium Signal Transduction, Lecture Notes in Physics, Understanding Calcium Dynamics, Springer, ISBN 3-540-40236-5 , 153-178

Stefan Wuchty (2003): Small-Worlds in RNA, Nucl. Acid Res., 31 , 1108-1117

Lutz Brusch, Wolfram Lorenz, Michal Or-Guil, Markus Br, Ursula Kummer (2002): Fold-Hopf Bursting in a Model for Calcium Signal Transduction, Z. Phys. Chem., accepted for publication

Stefan Wuchty (2002): Interaction and Domain Networks of Yeast, Proteomics, 2 , 1715-1723

Vladimir Grubelnik, Ann Z. Larsen, Ursula Kummer, Lars F. Olsen, Marko Marhl (2001): Mitochondria Regulate the Amplitude of Simple and Complex Calcium Oscillations, J. Biophys. Chem., 94 , 59-74

Carel van Gend, Ursula Kummer (2001): STODE - Automatic Stochastic Simulation of Systems Described by Differential Equations, Proceedings of the 2nd International Conference on Systems Biology (Yi, Hucka, Morohasi, Kitano, eds.), Omnipress, Madison, USA , 326-333

Stefan Wuchty (2001): Scale-free Behaviour in Protein Domain Networks, Mol. Biol. Evol., 18 , 1694-1702

Ursula Rost, Erich Bornberg-Bauer (2001): TreeWiz - Interactive Exploration of Huge Trees, Bioinformatics, 18 , 1-6

Marcus J.B. Hauser, Ursula Kummer, Ann Z. Larsen, Lars F. Olsen (2001): Oscillatory Dynamics Protect Enzymes and Possibly Cells Against Toxic Substances, Faraday Discussions, 120 , 215-227

Ursula Kummer, Gerold Baier, Lars F. Olsen (2000): Robustness in a Model for Calcium Signal Transduction Dynamics, Proceedings of BTK2000 - Animating the Cellular Map (Hofmeyr, Rohwer, Snoep, eds.), Stellenbosch University Press, Stellenbosch , 171-177

Ursula Kummer, Lars F. Olsen, C. Jane Dixon, Anne K. Green, Erich Bornberg-Bauer, Gerold Baier (2000): Switching from Simple to Complex Oscillations in Calcium-Signalling, Biophys. J., 79 , 1188-1195

Gerold Baier, Ursula Kummer, Sven Sahle (1999): An Electrochemically Induced Dynamic Instability, J. Phys. Chem., 103 , 33-37

Lars F. Olsen, Ursula Kummer, Anne K. Green, C. Jane Dixon, Marcus J.B. Hauser (1999): Dynamics and Information Processing in Biochemical Pathways, Proceedings of the Workshop on Computation of Biochemical Pathways and Genetic Networks (Bornberg-Bauer, DeBeuckelaer, Kummer, Rost, eds.), Logos, Berlin , 123-134

Ursula Kummer, Gerold Baier (1998): A Dynamic Enzymatic Switch, J. Phys. Chem., 102 , 5892-5897

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